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1. Design and Development of Active Force Probes for
Characterizing Biomolecular Interactions:
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Of late, Atomic force microscopy (AFM) has become a powerful
tool to typify biological interactions at the single molecule
level. In a conventional AFM system, a passive microcantilever
is used as the force-sensing element to measure the interaction
forces between a microcantilever tip and an apposing surface,
both decorated with biomolecules of interest. The
microcantilever is brought into and out of contact with the
apposing surface using a piezo actuator. By employing an optical
lever detection mechanism to monitor cantilever deflection,
various biophysical parameters like bond force, bond lifetimes
and molecular elasticities can be extracted. Although
microcantilever-based AFM has proven itself to be a powerful
tool to study these interactions, extending this approach for
multi-probe parallel measurements has its limitations. Moreover
high-speed imaging in fluid is limited by the dynamics of both
microcantilevers and piezo-actuators.
To address these issues, a membrane-based active probe structure
has recently been developed. The micromachined probe has
self-sensing capability as it uses a dielectric membrane on a
transparent substrate as the force sensing mechanical structure
and has an integrated diffraction-based micro-interferometer for
membrane displacement measurement. The probe membranes can also
be electrostatically actuated, which removes the need for a
piezo-actuator and giving self-actuation capability to the
probe. Figure 1 schematically shows a membrane coupled with a
microcantilever in a typical experiment.
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Figure 1: Schematic of a force spectroscopy probe membrane with
self-sensing and self-actuation capabilities coupled with an AFM
cantilever in a typical force spectroscopy experiment setup. |
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To demonstrate the self-actuation capabilities of the membranes
for single-molecular force spectroscopy measurements, relatively
stiff silicon nitride/dioxide membranes were fabricated as
actuators while softer AFM cantilevers were used as force
sensors. We used them to measure unbinding forces between L-selectin
reconstituted into membrane-supported lipid bilayers and an
antibody.
The stiff silicon nitride/dioxide probes are good for actuation
as the characteristic of the actuator is limited by the membrane
dynamic. However, if one were to use softer membrane probes that
could be actuated and also act as force sensors, the need for a
cantilever would be completely eliminated. We have recently
fabricated soft polymer-based (parylene) membrane probes, with
spring constants on the order of few tens of N/m for
experimentation in liquid. These membranes are capable of
detecting displacement changes with a resolution of <10 fm/√Hz
for frequencies as low as 3 Hz using a differential readout
scheme. This provides a force sensitivity of 0.3 – 3 pN with 1
kHz bandwidth using the membranes with spring constants of 1 –
10 N/m, which seems feasible to fabricate.
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Figure 2: Displacement noise spectrum of the 200 μm diameter
membrane probe. |
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Due to its low elastic modulus parylene, a biocompatible polymer
makes the fabrication of softer membranes possible. Moreover the
hydrophilicity of parylene can be altered by oxygen plasma
treatment, a key feature for their functionalization with
biomolecules. These probes, functionalized with biotinylayted
BSA and tested against streptavidin-coated cantilevers. While
biotin could interact with streptavidin, BSA helped reduce
nonspecific binding by blocking all exposed surfaces. Figure 3
shows the simultaneous data captured by both sensors.
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Figure 3: Comparison of force data
simultaneously captured by a coupled AFM cantilever and a
membrane probe functionalized by biotin/streptavidin. |
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The stiffness of the probes can be tuned using the
parallel-plate type integrated electrostatic actuator which
moves the membrane. An important implication of adjustable
spring constant for force spectroscopy is that, a small,
relatively stiff membrane with smaller coefficient of viscous
damping can be used for low force noise experiments. The large
spring constant of such a membrane can be reduced electrically
to obtain a larger signal for unit force, i.e. higher detection
sensitivity, while still being limited by thermal mechanical
noise dominated by the interaction of the probe structure with
the surrounding liquid. A proof of principle experiment showing
sensitivity improvement was carried out by taking force curves
with a single probe at two different bias points as shown in
figure 4. |
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Figure 4 (a) Measured and predicted variation of the spring
constant of the membrane with increasing DC bias voltage. The
inset shows the measured and predicted membrane displacement as
a function of DC bias voltage. (b) Force curves obtained by
bringing the AFM tip in and out of contact with the probe
membrane biased at 35V. The top curve recorded from the AFM
cantilever shows a peak force of 400 nN. The bottom curve is
recorded from the membrane with a spring constant of 22 N/m. (c)
The peak force applied by the cantilever is kept constant at 400
nN as shown in top trace. The bottom trace is from the same
membrane with an electrically reduced spring constant of 11 N/m. |
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The membrane architecture allows array formation for parallel
operation. The parallel AFM setup we have developed uses the
array of membranes that can be coupled to an array of
cantilevers to perform parallel experiments. In this setup, the
membranes are used to actuate the cantilevers that serve as
force sensors. It is possible to control the force on the
individual cantilevers precisely since they are surface actuated
in this scheme. Figure 5 shows simultaneous reading we obtained
from two different cantilevers to demonstrate the feasibility
of the method. |
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Figure 5. Cantilever 1 and 8 are engaged to the membrane probe
and the substrate, respectively. The drive signals applied to
the membrane probe and the piezo actuator that carries the
microcantilevers are shown. The readout signals obtained from
cantilever-8 shows that this cantilever follows the piezo
movement whereas cantilever-1 movement is a combination of piezo
and membrane movements. |
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Biological force studies using AFM typically involve coating
microcantilevers and an apposing surface with different
biomolecules of interest and retracting the cantilevers at set
speeds that span a wide range. At very high speeds of pulling,
the cantilevers are subjected to viscous drag forces, whose
magnitudes often match or exceed the unbinding forces between
the biomolecules. This introduces ambiguity in the forces being
measured. We are currently modeling the hydrodynamic effects on
cantilevers and membrane probes using FLUENT (CFD software)
under conditions that simulate high speed pulling. Preliminary
investigations have suggested that membrane-based probes are
much less susceptible to drag forces than cantilevers for the
same speed of pulling. |
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Related Publications:
H Torun, O Finkler,
F L Degertekin,
"Athermalization in atomic force microscope based
force spectroscopy using matched microstructure
coupling",
Review of Scientific Instruments,
80, 076103, 2009
H
Torun, K K Sarangapani, F L Degertekin, “Fabrication
and Characterization of Micromachined Active Probes
with Polymer Membranes for Biomolecular Force
Spectroscopy”, under review,
JMEMS, 2008
H Torun, K K Sarangapani, F L Degertekin, "Spring constant
tuning of active atomic force microscope probes using
electrostatic spring softening effect", Appl.
Phys. Lett., 91 (2007) 253113 (Also selected by the
Virtual Journal of Nanoscale Science and Technology,http://www.vjnano.org/nano/ )
(pdf)
H Torun, J Sutanto, K K Sarangapani, P Joseph, F L Degertekin, C
Zhu, "Micromachined membrane-based active probe for biomolecular
mechanics measurement ", Nanotechnology,
18 (2007) 165303 ((The paper is awarded with second prize
in the Georgia Tech Student Paper Competition sponsored by SAIC.) (pdf)
H Torun, K K Sarangapani, F L Degertekin, C Zhu, “Parallel
active polymer probes with integrated interferometer for single
molecule force spectroscopy”, International Meeting
on AFM in Life Sciences and Medicine, Monterey, CA,
Oct 15-18 2008
H Torun, K K Sarangapani, C Zhu, F L Degertekin, “Single
molecule force spectroscopy using active polymer membrane probes
with integrated interferometer”, International Congress of
Nanotechnology (ICN+T 2008), Keystone, Co, July 20-25 2008
H Torun,
K K Sarangapani, C Zhu, F L Degertekin, “Active Atomic Force
Microscope Probes with Electrostatic Spring Constant Tuning
Capability”, International Congress of Nanotechnology (ICN+T
2008), Keystone, Co, July 20-25 2008
F L Degertekin, G Onaran, M Balantekin, H
Torun, "Novel AFM probes for fast imaging and quantitative
material characterization", MRS Fall Meeting, Boston, MA, Nov
26-30, 2007
H Torun, K K Sarangapani, C Zhu, F L Degertekin, "Micromachined
membrane-based active probe for biomolecular mechanics
measurement", Seeing at Nanoscale V, Santa
Barbara, CA,
June 24-27 (The
presentation is awarded with "honorable mention poster"
certificate.)
F L Degertekin, A G Onaran, H
Torun, M Balantekin, K Sarangapani, C Zhu, "AFM probe structures
with integrated interferometric sensing and electrostatic
actuation", Kanazawa Workshop on Atomic Force Microscopy,
Kanazawa, Japan, January 12-18th, 2007
H Torun, J B Sutanto, K K Sarangapani, C Zhu, F L Degertekin,
“Membrane type displacement and force sensing transducer with
sub-nano sensitivity for biological applications”, International
Congress of Nanotechnology (ICNT 2006), Basel, 30 July - 4
August 2006
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2. Design and development of thermo-mechanical thermal detector
arrays with optical readout:
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Opto–mechanical thermal detector with optical readout is
designed and realized for infrared (IR) imaging. The detector
pixels are membranes that are connected to bimaterial legs,
which are connected to a substrate through thermal isolation
legs. The conversion of IR radiation into temperature difference
causes deflection along bimaterial legs and the deflected
membranes as a result of this phenomenon are detected by optical
means. Since the readout method proposed is by optical means, no
electrically (so thermally) conductive paths are needed on the
pixels. Therefore the thermally isolated pixels offer higher
sensitivity compared to cooled detectors. The readout method
proposed for the project is to detect the deflection of
membranes by pixel level micro-interferometers with diffraction
gratings. That architecture offers operation at shot noise level
of the coherent light source for the readout illumination. By
this way, it is possible to prevent the FPA be readout noise
limited. It is shown that noise equivalent temperature
difference (NETD) for our design is <10 mK including the readout
noise sources.
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Figure 6: (a) Fabricated thermal detector pixels (b) FEM result
of thermomechanical deflection for the selected pixel geometry
(c) Analytical calculation for the deflection as a function of
layer thicknesses per
1K temperature difference. |
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Related Publications:
H Torun,
"Design and Fabrication of Thermo – Mechanical Thermal Detector
Arrays with Optical Readout", M.Sc. Thesis, Koc University,
2005. (pdf)
M
F Toy, O Ferhanoglu, H Torun, H Urey, “Uncooled
Infrared Thermomechanical Detector Array: Design,
Fabrication and Testing”, to appear,
Sensors and Actuators A,
2008
H Torun, H Urey, “Uncooled thermal camera with optical readout”, Opto-Electron.
Rev. 14, 55
(2006) (pdf)
H Torun,
H. Urey, “Thermal Deflections in Multilayer Microstructures and
Athermalization”, J
Appl. Phys. 100,
023527 (2006) (pdf)
O. Ferhanoğlu, M. F. Toy, H. Torun, H. Ürey, “Optik Okumalı
Soğutmasız Kızılötesi Dedektör”, 8. Ulusal Fotonik Çalıştayı,
Koç Univ,Istanbul,
Sep 2006
H Torun, O Ferhanoglu, H Urey, “Thermo-mechanical Detector Array
with Optical Readout”, International Conference On Optical MEMS
and Their Applications, Montana, August 21-24th, 2006
H Torun, H Urey, “Uncooled thermal camera with optical readout”,
Proc. SPIE Vol. 5957, p. 152-160, Warsaw,
August 2005
H. Urey, H Torun,
“Optik Okumalı Soğutmasız MEMS-Tabanlı Termal Kamera”, 7. Ulusal
Optik, Elektro-Optik ve Fotonik Calisma Toplantisi, Bilkent University, Ankara,
December 2005
H Urey, H Torun, US Patent
Filed, Aug 2006 (Licensed to ASELSAN)
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